PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 357aa    MW: 39840.6 Da    PI: 8.143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10159206455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_004500808.1 159 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 206
                     8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17153224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-10153210No hitNo description
PROSITE profilePS5088815.618155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17155221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNLQQQQHHQ SYSSSSSSLN HSPSGFINHF HMPIVAAPGI DVNSAISRTF SCPPVLVDPK  60
LNHSPSLGKD NCSNKRKPEK AHNPKLKIVD ENDNKDKKRI KVGVEDGESK ITRQASGKLK  120
NTNNKKEKCD TSNSKASEVQ NEKPDYIHVR ARRGQATDSH SLAERVRREK ISERMKYLQD  180
LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVN PRHDFNIDDL FEKEVFPNCD  240
ANATFSAMGI SSELNSINPY VQFNSPQQFV SYGGLDNTGM NPSDMGLRRT ISAPVSLPET  300
FIDSSCFSQI LPSTTWEGDF QNLYNNLSFD QARATSFSSQ SQLFTGLGEA SNLKMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405840.0BT140584.1 Medicago truncatula clone JCVI-FLMt-18N21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500808.10.0PREDICTED: transcription factor bHLH63-like
SwissprotQ8GY614e-58BH063_ARATH; Transcription factor bHLH63
TrEMBLG7J7371e-174G7J737_MEDTR; BHLH transcription factor
STRINGGLYMA06G01430.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-59cryptochrome-interacting basic-helix-loop-helix 1